Publications

2019:

(108) Reilly, S. B., A. L. Stubbs, B. R. Karin, E. Arida, D. T. Iskandar, and J. A. McGuire. 2019. Recent colonization and expansion through the Lesser Sundas by seven amphibian and reptile species. Zoologica Scripta.

(107) Blom, M. P. K., N. J. Matzke, J. G. Bragg, E. Arida, C. C. Austin, A. Backlin, M. A. Carretero, R. N. Fisher, F. Glaw, S. Hathaway, D. T. Iskandar, J. A. McGuire, B. R. Karin, S. B. Reilly, E. N. Rittmeyer, S. Rocha, M. Sanchez, A. L. Stubbs, M. Vences, and C. Moritz. 2019. Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate. Proceedings of the Royal Society B.

(106) Portik, D. M., R. C. Bell, D. C. Blackburn, A. M. Bauer, C. D. Barratt, W. R. Branch, M. Burger, A. Channing, T. J. Colston, W. Conradie, J. M. Dehling, R. C. Drewes, R. Ernst, E. Greenbaum, V. Gvoždik, J. Harvey, A. Hillers, M. Hirschfeld, G. F. M. Jongsma, J. Kielgast, M. T. Kouete, L. Lawson, A. D. Leaché, S. P. Loader, S. Lötters, A. van der Meijden, M. Menegon, S. Müller, Z. T. Nagy, C. Ofori-Boateng, A. Ohler, T. J. Papenfuss, D. Rössler, U. Sinsch, M.-O. Rödel, M. Veith, J. Vindum, A.-G. Zassi-Boulou, and J. A. McGuire. 2019. Sexual dichromatism drives diversification within a major radiation of African amphibians. Systematic Biology.  

(105) Jones, B. K., A. J. Saviola, S. B. Reilly, A. L. Stubbs, E. Arida, D. T. Iskandar, J. A. McGuire, J. R. Yates, III, and S. P. Mackessy. 2019. Venom composition in a phenotypically variable pit viper (Trimeresurus insularis) across the Lesser Sundas Archipelago. Journal of Proteome Research 18:2206-2220. pdf copy

(104) Reilly, S. B., A. L. Stubbs, B. R. Karin, K. Bi, E. Arida, D. T. Iskandar, and J. A. McGuire. 2019. Leap-frog dispersal and mitochondrial introgression: Phylogenomics and biogeography of Limnonectes fanged frogs in the Lesser Sundas Archipelago of Wallacea. Journal of Biogeography 46:757-769. pdf copy

2018:

(103) Karin, B. R., A. L. Stubbs, U. Arifin, L. M. Bloch, G. Ramadhan, D. T. Iskandar, E. Arida, S. B. Reilly, A. Kusnadi, and J. A. McGuire. 2018. Survey of the herpetofauna of the Kei Islands (Kei Kecil, Kei Besar, Tam, and Kur), Maluku, Indonesia. Raffles Bulletin of Zoology 66:704-738. pdf copy

(102) Cox, C. L., A. R. Davis Rabosky, I. A. Holmes, J. Reyes-Velasco, C. E. Roelke, E. N Smith, O. Flores-Villela, J. A. McGuire, and J. A. Campbell. 2018. Synopsis and taxonomic revision of three genera in the snake tribe Sonorini. Journal of Natural History 52:945-988. pdf copy

(101) Riyanto, A., A. Hamidy, and J. A. McGuire. 2018. A new bent-toed gecko (Cyrtodactylus: Squamata: Gekkonidae) from the island of Tanahjampea, South Sulawesi, Indonesia. Zootaxa 4442(1):122-136. pdf copy

(100) Lavin, B. R., G. O. U. Wogan, J. A. McGuire, and C. R. Feldman. 2018. Phylogeography of the Northern Alligator Lizard (Squamata, Anguidae): hidden diversity in a western endemic. Zoologica Scripta 47:462-476. pdf copy

(99) Araujo, A. C., A. M. Martín González, B. Sandel, P. K. Maruyama, F. Paulina de Araújo, A. G. Coelho, R. Rodrigues Faria, E. Fischer, G. Kohler, F. M. G. Las-Casas, A. V. Lopes, A. O. Machado, C. G. Machado, I. C. Machado, J. A. McGuire, A. C. Moura, G. M. Oliveira, P. E. Oliveira, M. A. Rocca, L. da Cruz Rodrigues, M. Rodrigues, M. Sazima, I. G. Varassin, J. Vizentin-Bugoni, Z. Wang, B. Dalsgaard, J.-C. Svenning. 2018. Spatial distance and climate determine modularity in a cross-biomes plant-hummingbird interaction network in Brazil. Journal of Biogeography 45:1846-1858. pdf copy

(98) Dalsgaard, B., J. Kennedy, B. I. Simmons, A. Baquero, A. M. M. González, A. Timmermann, J. A. McGuire, J. Ollerton, W. J. Sutherland, and C. Rahbek. 2018. Trait evolution, resource specialization and vulnerability to plant extinctions among hummingbirds on Antillean islands: the role of mountains and floral resource richness. Proceedings of the Royal Society B, 285:20172754. pdf copy

(97) Frantz, L. A. F., A. Rudzinski, A. M. S. Nugraha, A. Evin, J. Burton, A. Hulme-Beaman, A. Linderholm, R. Barnett, R. Vega, E. K. Irving-Pease, J. Haile, R. Allen, K. Leus, J. Shephard, M. Hillyer, S. Gillemot, J. van den Hurk, S. Ogle, C. Atofanei, M. G. Thomas, F. Johansson, A. H. Mustari, J. Williams, K. Mohamad, C. S. Damayanti, I. D. Wiryadi, D. Obbles, S. Mona, H. Day, M. Yasin, S. Meker, J. A. McGuire, B. J. Evans, T. von Rintelen, S. Y. W. Ho, J. B. Searle, A. C. Kitchener, A. A. Macdonald, D. J. Shaw, R. Hall, P. Galbusera, and G. Larson. 2018. Synchronous diversification of Sulawesi’s iconic artiodactyls driven by recent geological events. Proceedings of the Royal Society B 285:20172566. pdf copy

(96) McGuire, J. A., D. D. Cotoras, B. O’Connell, S. Z. S. Lawalata, C. Y Wang-Claypool, A. Stubbs, X. Huang, G. O. U. Wogan, S. M Hykin, S. B. Reilly, K. Bi, A Riyanto, E. Arida, L. L. Smith, H. Milne, J. W. Streicher, and D. T. Iskandar. 2018. Squeezing water from a stone: High-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards. PeerJ. 6:e4470 https://doi.org/10.7717/peerj.4470

(95) Clark, C. J., J. A. McGuire, E. Bonaccorso, J. S. Berv, and R. O. Prum. 2018. Complex coevolution of wing, tail, and vocal sounds of courting male bee hummingbirds. Evolution 72:630-646. pdf copy

2017:

(94) Stiles, F. G., J. V. Remsen, Jr., and J. A. McGuire. 2017. The generic classification of the Trochilini (Aves: Trochilidae): Reconciling taxonomy with phylogeny. Zootaxa 4353(3):401-424. pdf copy

(93) Skandalis, D. A., P. S. Segre, J. W. Bahlman, D. J. E. Groom, K. C. Welch Jr., C. C. Witt, J. A. McGuire, R. Dudley, D. Lentink and D. L. Altshuler. 2017. The biomechanical origin of extreme wing allometry in hummingbirds. Nature Communications 8:1047. DOI: 10.1038/s41467-017-01223-x. pdf copy

(92) Reilly, S. B., G. O. U. Wogan, A. L. Stubbs, E. Arida, D. T. Iskandar, and J. A. McGuire. 2017. Toxic toad invasion of Wallacea: A biodiversity hotspot characterized by extraordinary endemism. Global Change Biology 23:5029-5031. pdf copy

(91) Stubbs, A. L., B. R. Karin, U. Arifin, D. T. Iskandar, E. Arida, S. B. Reilly, L. M. Bloch, A. Kusnadi, and J. A. McGuire. 2017. A new species of Lepidodactylus (Squamata: Gekkonidae) from the Kei Islands, Maluku, Indonesia. Zootaxa 4350(1):091-105. pdf copy

(90) Riyanto, A., Mulyadi, J. A. McGuire, M. D. Kusrini, Febylasmia, I. F. Basyir, and H. Kaiser. 2017. A new small bent-toed gecko of the genus Cyrtodactylus (Squamata: Gekkonidae) from the lower slopes of Mount Tambora, Sumbawa Island, Indonesia. Zootaxa 4242:517-528. pdf copy

(89) Iskandar, D. T., J. A. McGuire, and A. A. T. Amarasinghe. 2017. Description of five new day geckos of Cnemaspis kandiana Group (Sauria: Gekkonidae) from Sumatra and Mentawei Archipelago, Indonesia. Journal of Herpetology 51:142-153. pdf copy

2016:

(88) Davis Rabosky, A. R., C. L. Cox, D. L. Rabosky, P. O. Title, I. A Holmes, A. Feldman, and J. A. McGuire. 2016. Coral snakes predict the evolution of mimicry across New World snakes. Nature Communications DOI: 10.1038/ncomms11484. pdf copy

(87) Suh, A., C. C. Witt, J. Menger, K. R. Sadanandan, L. Podsiadlowski, M. Gerth, A. Weigert, J. A. McGuire, J. Mudge, S. V. Edwards, and F. E Rheindt. 2016. Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes. Nature Communications DOI: 10.1038/ncomms11396. pdf copy

(86) Wogan, G. O.U., B. L. Stuart, D. T. Iskandar, and J. A. McGuire. 2016. Deep genetic structure and ecological divergence in a widespread human commensal toad. Biology Letters 12:20150807. pdf copy

(85) Lessard, J.-P., B. Weinstein, M. K. Borregaard, K. A. Marske, J. A. McGuire, J. L. Parra, C. Rahbek, C. H. Graham. 2016. Process-based null models and explicit species pool definitions reveal hidden and generalized patterns of community structure. The American Naturalist 187: 75-88. pdf copy

2015:

(84) Amarasinghe, A. A. T., G. Vogel, J. A. McGuire, I. Sidik, J. Supriatna, and I. Ineich. 2015. Description of a second species of the genus Rabdion Duméril, Bibron & Duméril, 1854 (Colubridae: Calamariinae) from Sulawesi, Indonesia. Herpetologica 71:234-239. pdf copy

(83) Remsen, J. V., F. G. Stiles, and J. A. McGuire. 2015. Classification of the Polytminae (Aves: Trochilidae). Zootaxa 3957(1):143-150. pdf copy

(82) Hykin, S. M., K. Bi, and J. A. McGuire. 2015. Fixing formalin: A method to recover genomic-scale DNA sequence data from formalin-fixed museum specimens using high-throughput sequencing. PLoS ONE 10(10): e0141579. pdf copy

(81) González, A. M. M., plus 37 co-authors. 2015. The macroecology of of phylogenetically structured hummingbird-plant networks. Global Ecology and Biogeography 24:1212-1224. pdf copy

(80) Abrahamczyk, S., D. Souto-Vilarós, J. A. McGuire, and S. S. Renner. 2015. Diversity and clade ages of the West Indian hummingbirds and of the largest plant clades dependent on them: A 5-9 Myr young mutualistic system. Biological Journal of the Linnean Society 114:848-859. pdf copy

2014:

(79) Benham, P. M, A. M. Cuervo, J. A. McGuire, and C. C. Witt. 2014. Biogeography of the Andean metaltail hummingbirds: contrasting evolutionary histories of tree-line and habitat-generalist clades. Journal of Biogeography 42:763-777. pdf copy

(78) Stenglein, M. D., E. Leavitt, M. Abramovitch, J. A. McGuire, and J. L. DeRisi. 2014. Genome sequence of a bornavirus recovered from an African garter snake (Elapsoidea loveridgei). Genome Announcements 2(5):e00779-14. pdf copy

(77) Iskandar, D. T., B. J. Evans, and J. A. McGuire. 2014. A novel reproductive mode in frogs: A new species of fanged frog with internal fertilization and birth of tadpoles. PLoS ONE 9(12): e115884. pdf copy

(76) Husak, J. F., and J. A. McGuire. 2014. Does ‘gliding while gravid’ explain Rensch’s rule in flying lizards? Biological Journal of the Linnean Society 113:270-282. pdf copy

(75) Weinstein, B. G., B. Tinoco, J. Parra, L. M. Brown, J. A. McGuire, F. G. Stiles, and C. H. Graham. 2014. Taxonomic, phylogenetic and trait betadiversity in South American hummingbirds. American Naturalist 184:211-224. pdf copy

(74) Peñalba, J. V., L. L. Smith, M. A. Tonione, C. Sass, S. M Hykin, P. L. Skipwith, J. A. McGuire, R. C. K. Bowie, and C. Moritz. 2014. Sequence Capture using PCR-generated Probes (SCPP): A cost-effective method of targeted high-throughput sequencing for non-model organisms. Molecular Ecology Resources 14:1000-1010. pdf copy

(73) Rocha, L. A. plus 121 co-authors. 2014. Collecting biological specimens is essential in science and conservation. Science 344(6186):814-815. pdf copy

(72) Grismer, L. L., A. Riyanto, D. T. Iskandar, and J. A. McGuire. 2014. A new species of Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) from Pulau Enggano, southwestern Sumatra, Indonesia. Zootaxa 3821(4):485-495. pdf copy

(71) McGuire, J. A., C. C. Witt, J. V. Remsen, Jr., A. Corl, D. L. Rabosky, D. L. Altshuler, and R. Dudley. 2014. Molecular phylogenetics and the diversification of hummingbirds (Apodiformes: Trochilidae). Current Biology 24:910-916. pdf copy with supplemental materials and pdf copy without supplemental materials

2013:

(70) Grismer, L. L., P. L. Wood, Jr., S. Anuar, M. A. Muin, E. S. H. Quah, J. A. McGuire, R. M. Brown, and N. V. Tri. 2013. Integrative taxonomy uncovers high levels of cryptic species diversity in Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) and the description of a new species from Peninsular Malaysia. Zoological Journal of the Linnean Society 169:849-880. pdf copy

(69) Projecto-Garcia, J., C. Natarajan, H. Moriyama, R. E. Weber, A. Fago, Z. A. Cheviron, R. Dudley, J. A. McGuire, C. C. Witt, and J. F. Storz. 2013. Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds. Proceedings of the National Academy of Sciences of the United States 110(51):20669-20674. pdf copy

(68) Devitt, T. J., S. E. Cameron Devitt, B. D. Hollingsworth, J. A. McGuire, and C. Moritz. 2013. Montane refugia predict population genetic structure in the Large-blotched Ensatina salamander. Molecular Ecology 22:1650-1665. pdf copy

(67) Blackburn, D. C., C. D. Siler, A. C. Diesmos, J. A. McGuire, D. C. Cannatella, and R. M. Brown. 2013. An adaptive radiation of frogs in a Southeast Asian island archipelago. Evolution 67:2631-2646. pdf copy

(66) Linkem, C. W., R. M. Brown, C. D. Siler, C. C. Austin, D. T. Iskandar, A. C. Diesmos, J. Supriatna, N. Andayani, and J. A. McGuire. 2013. Stochastic faunal exchanges drive diversification in widespread Wallacean and Pacific Island lizards, (Squamata: Scincidae: Lamprolepis smaragdina). Journal of Biogeography 40:507-520. pdf copy

2012:

(65) Fujita, M. K., A. D. Leaché, F. T. Burbrink, J. A. McGuire, and C. Moritz. 2012. Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology and Evolution 27:480-488. pdf copy

(64) Brown, R. M., C. D. Siler, L. L. Grismer, I. Das, and J. A. McGuire. 2012. Phylogeny and cryptic diversification in Southeast Asian flying geckos. Molecular Phylogenetics and Evolution 65:351-361. pdf copy

(63) González-Caro, S., J. L. Parra, C. H. Graham, J. A. McGuire, C. D. Cadena. 2012. Sensitivity of metrics of phylogenetic structure to scale, source of data and species pool of hummingbird assemblages along elevational gradients. PLoS ONE 7(4): e35472. doi:10.1371/journal.pone.0035472. pdf copy

(62) Rahmi, Y., M. Kamsi, J. A. McGuire, D. P. Bickford, and D. T. Iskandar. 2012. The distribution of Gonocephalus species (Reptilia, Iguania, Agamidae) on Sumatra, Indonesia. The 2nd International Symposium for Sustainable Humanosphere pgs. 119-128. pdf copy

2011:

(61) Setiadi, M. I., J. A. McGuire, R. M. Brown, M. Zubairi, D. T. Iskandar, N. Andayani, J. Supriatna, B. J. Evans. 2011. Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities. The American Naturalist 178:221-240. pdf copy

(60) Swei, A, J. J. L. Rowley, D. Rödder, M. L. L. Diesmos, A. C. Diesmos, C. J. Briggs, R. M. Brown, T. T. Cao, T. L. Cheng, R. A. Chong, B. Han, J.-M. Hero, H. D. Hoang, M. D. Kusrini, D. T. T. Le, J. A. McGuire, M. Meegaskumbura, M.-S. Min, D. G. Mulcahy, T. Neang, S. Phimmachak, D.-Q. Rao, N. M. Reeder, S. D. Schoville, N. Sivongxay, N. Srei, M. Stöck, B. L. Stuart, L. S. Torres, D. T. A. Tran, T. S. Tunstall, D. Vieites, and V. T. Vredenburg. 2011. Is chytridiomycosis an emerging infectious disease in Asia? PLoS ONE 6:e23179. pdf copy

(59) Swei, A, J. J. L. Rowley, D. Rödder, M. L. L. Diesmos, A. C. Diesmos, C. J. Briggs, R. Brown, T. T. Cao, T. L. Cheng, R. A. Chong, B. Han, J.-M. Hero, H. D. Hoang, M. D. Kusrini, D. T. T. Le, J. A. McGuire, M. Meegaskumbura, M.-S. Min, D. G. Mulcahy, T. Neang, S. Phimmachak, D.-Q. Rao, N. M. Reeder, S. D. Schoville, N. Sivongxay, N. Srei, M. Stöck, B. L. Stuart, L. S. Torres, D. T. A. Tran, T. S. Tunstall, D. Vieites, and V. T. Vredenburg. 2011. Prevalence and distribution of chytridiomycosis throughout Asia. FrogLog 98:33-34. pdf copy

(58) Riyanto, A., Mumpuni, and J. A. McGuire. 2011. Morphometry of striped tree frogs, Polypedates leucomystax (Gravenhorst, 1829) from Indonesia with description of a new species. Russian Journal of Herpetology 18:29-35. pdf copy

(57) McGuire, J. A., and R. Dudley. 2011. The biology of gliding in flying lizards (Genus Draco) and their fossil and extant analogs. Integrative and Comparative Biology 51:983-990. pdf copy

(56) Parra, J. P., C. Rahbek, J. A. McGuire, and C. H. Graham. 2011. Contrasting patterns of phylogenetic structure along environmental gradients for hummingbird clades. Journal of Biogeography 38:2350-2361. pdf copy

(55) Buermann, W., J. Chaves, R. Dudley, J. A. McGuire, T. B. Smith, and D. L. Altshuler. 2011. Projected changes in elevational distribution and flight performance of montane Neotropical hummingbirds in response to climate change. Global Change Biology 17:1671-1680. pdf copy

2010:

(54) Parra, J. P., C. H. Graham, and J. A. McGuire. 2010. Incorporating lineage identity in analyses of phylogenetic community structure: an example with hummingbirds. American Naturalist 176:573-587. pdf copy

(53) Brown, R. M., C W. Linkem, C. D. Siler, J. Sukumaran J. A. Esselstyn, A. C. Diesmos, D. T. Iskandar, D. Bickford, B. J. Evans, J. A. McGuire, J. Supriatna, and N. Andayani. 2010. Phylogeography and historical demography of Polypedates leucomystax in the islands of Indonesia and the Philippines: Evidence for human-mediated range expansion? Molecular Phylogenetics and Evolution 57:598-619. pdf copy

(52) Esselstyn, J. A., C. H. Oliveros, R. G. Moyle, A. T. Peterson, J. A. McGuire, and R. M. Brown. 2010. Integrating phylogenetic and taxonomic evidence illuminates complex biogeographic patterns along Huxley’s modification of Wallace’s Line. Journal of Biogeography 37:2054-2066. pdf copy

(51) Fujita, M. K., J. A. McGuire, S. C. Donnellan, and C. Moritz. 2010. Diversification and persistence at the arid-monsoonal interface: Australia-wide biogeography of the Bynoe’s Gecko (Heteronotia binoei; Gekkonidae). Evolution 64:2293-2314. pdf copy

(50) Altshuler, D. L, R. Dudley, S. M. Heredia, and J. A. McGuire. 2010. Allometry of hummingbird lifting performance. Journal of Experimental Biology 213:725-734. pdf copy

2009:

(49) Genome 10K Community of Scientists (66 co-authors). 2009. Genome 10K: A proposal to obtain whole-genome sequence for 10,000 vertebrate species. Journal of Heredity 100:659-674. pdf copy

(48) Kirchman, J. J., C. C. Witt, J. A. McGuire, and G. R. Graves. 2009. DNA from 100-year old holotype confirms the validity of a potentially extinct hummingbird species. Biology Letters 6:112-115. pdf copy

(47) Parra, J. P., J. V. Remsen Jr., M. Alvarez-Robelledo, and J. A. McGuire. 2009. Molecular phylogenetics of the hummingbird genus Coeligena. Molecular Phylogenetics and Evolution 53:425-434. pdf copy

(46) Graham, C. H., J. L. Parra, C. Rahbek, and J. A. McGuire. 2009. Phylogenetic structure in tropical hummingbird communities. Proceedings of the National Academy of Sciences of the United States 106:19673-19678. pdf copy

(45) Koch, A., E. Arida, J. A. McGuire, D. T. Iskandar, and W. Bohme. 2009. A new species of Calamaria (Squamata: Colubridae) similar to C. ceramensis de Rooij, 1913, from the Banggai Islands, east of Sulawesi, Indonesia. Zootaxa 2196:19-30. pdf copy

(44) Gregory, T. R., C. B. Andrews, J. A. McGuire, and C. C. Witt. 2009. The smallest avian genomes are found in hummingbirds. Proceedings of the Royal Society B 276:3753-3757. pdf copy

(43) Leaché, A. D., M. S. Koo, R. N. Fisher, and J. A. McGuire. 2009. Quantifying phylogenetic and ecological divergence to resolve species limits in the coast horned lizard (Phrynosoma coronatum). Proceedings of the National Academy of Sciences of the United States 106:12418-23. pdf copy

(42) Macedonia, J. M., A. K. Lappin, E. O. Loew, J. A. McGuire, P. S. Hamilton, M. Plasman, Y. Brandt, J. A. Lemos-Espinal, and D. J. Kemp. 2009. Conspicuousness of Dickerson’s collared lizard (Crotaphytus dickersonae) through the eyes of conspecifics and predators. Biological Journal of the Linnean Society 97:749-765. pdf copy

(41) Brandley, M. C., D. L. Warren, A. D. Leaché, and J. A. McGuire. 2009. Homoplasy and clade support. Systematic Biology 58:184-198. pdf copy

(40) McGuire, J. A., C. C. Witt, J. V. Remsen, Jr., R. Dudley, and D. L. Altshuler. 2009. A higher-level taxonomy for hummingbirds. Journal of Ornithology 150:155-165. pdf copy

(39) Koch, A., J. A. McGuire, E. Arida, A. Riyanto, and A. Hamidy. 2009. First record of Gecko smithii Gray, 1842 (Reptilia: Gekkonidae) from Sulawesi, Indonesia. Salamandra 45:172-176. pdf copy

2008:

(38) Linkem, C. W., J. A. McGuire, C. J. Hayden, B. J. Evans, S. Lawalata, M. I. Setiadi, Umilaela, D. P. Bickford, T. Townsend, D. T. Iskandar, J. Supriatna, and R. M. Brown. 2008. A new species of bent-toed gecko (Gekkonidae: Cyrtodactylus) form Sulawesi Island, eastern Indonesia. Herpetologica 64:224-234. pdf copy

(37) Evans, B. J., J. A. McGuire, R. M. Brown, N. Andayani, and J. Supriatna. 2008. A coalescent framework for comparing alternative models of population structure with genetic data: evolution of Celebes toads. Biology Letters 4:430-433. pdf copy

(36) Hayden, C. J., R. M. Brown, G. Gillespie, M. I. Setiadi, Umilaela, C. W. Linkem, D. Bickford, A. Riyanto, Mumpuni, and J. A. McGuire. 2008. A new species of bent-toed gecko Cyrtodactylus Gray 1827 (Squamata: Gekkonidae) from the island of Sulawesi, Indonesia. Herpetologica 64:109-120. pdf copy

(35) Devitt, T. J., T. J. LaDuc, and J. A. McGuire. 2008. A multivariate statistical analysis of morphological variation in the Trimorphodon biscutatus complex (Squamata: Colubridae). Copeia 2008:370-387. pdf copy

2007:

(34) McGuire, J. A., C. W. Linkem, M. Koo, D. W. Hutchison, A. K. Lappin, D. O. Orange, J. Lemos-Espinal, B. R. Riddle, and J. Jaeger. 2007. Mitochondrial introgression and incomplete lineage sorting through space and time: Phylogenetics of crotaphytid lizards. Evolution 61:2879–2897. pdf copy

(33) McGuire, J. A., R. M. Brown, Mumpuni, A. Riyanto, and N. Andayani. 2007. The flying lizards of the Draco lineatus group (Squamata: Iguania: Agamidae): A taxonomic revision with descriptions of two new species. Herpetological Monographs 21:180-213. pdf copy

(32) McGuire, J. A., C. C. Witt, D. L. Altshuler, and J. V. Remsen, Jr. 2007. Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Systematic Biology 56:837–856. pdf copy

(31) Jiang, Zhi J, T. A. Castoe, C. C. Austin, F. T. Burbrink, M. D. Herron, J. A. McGuire, C. L. Parkinson, and D. D. Pollock. 2007. Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region. Accepted pending minor revision. BMC Evolutionary Biology 7:123. pdf copy

(30) Bickford, D. P., J. Supriatna, N. andayani, D. T. Iskandar, B. J. Evans, R. M. Brown, T. Townsend, Umilaela, D. Azhari, and J. A. McGuire. 2007. Indonesia’s protected areas need more protection – suggestions from island examples. Pgs 53-78 In Sodhi, N. S., G. Acciaioli, M. Erb, and A. K.-J. Tan (Eds.) Biodiversity and human livelihoods in protected areas. Cambridge Press, Cambridge. pdf copy

(29) Dudley, R., G. Byrnes, S. P. Yanoviak, B. Borrell, R. M. Brown, and J. A. McGuire. 2007. Gliding and the functional origins of flight: biomechanical novelty or necessity? Annual Review of Ecology, Evolution, and Systematics 38:179-201. pdf copy

2006:

(28) Grismer, L. Lee, J. L. Grismer, and J. A. McGuire. 2006. A new species of pitviper of the genus Popeia (Squamata: Viperidae) from Pulau Tioman, Pahang, West Malaysia. Zootaxa 1305:1-19. pdf copy

(27) Kuch, U., J. A. McGuire, and F. B. Yuwono. 2006. Death adders (Acanthophis laevis complex) from the island of Ambon (Maluku, Indonesia). Herpetozoa 19:81-82. pdf copy

(26) Leaché, A. D., and J. A. McGuire. 2006. Phylogenetic relationships of horned lizards (Phrynosoma) based on nuclear and mitochondrial data: Evidence for a misleading mitochondrial gene tree. Molecular Phylogenetics and Evolution 39:628-644. pdf copy

(25) Brandley, M. C., A. D. Leaché, D. L. Warren, and J. A. McGuire. 2006. Are unequal clade priors problematic for Bayesian phylogenetics? Systematic Biology 55:138-146. pdf copy

1993-2005:

(24) McGuire, J. A., and R. Dudley. 2005. The cost of living large: Comparative gliding performance in flying lizards (Draco). American Naturalist 166:93-106. pdf copy

(23) Altshuler, D. L, R. Dudley, and J. A. McGuire. 2004. Resolution of a paradox: Hummingbird flight at high elevation does not come without a cost. Proceedings of the National Academy of Sciences of the United States 101:17731-36. pdf copy

(22) Kuch, U., and J. A. McGuire. 2004. Range extensions of Lycodon capucinus BOIE, 1827 in eastern Indonesia. Herpetozoa 17:191-193. pdf copy

(21) Evans, B. J., R. M. Brown, J. A. McGuire, J. Supriatna, N. Andayani, A. Diesmos, D. J. Melnick, and D. C. Cannatella. 2003. Phylogenetics of fanged frogs: testing biogeographical hypotheses at the interface of the Asian and Australian faunal zones. Systematic Biology 52:1-29. pdf copy

(20) McGuire, J. A. 2003. Allometric prediction of locomotor performance: An example from Southeast Asian flying lizards. American Naturalist 161:347-369. pdf copy

(19) Hillis, D. M., D. D. Pollock, J. A. McGuire, and D. J. Zwickl. 2003. Is sparse taxon sampling a problem for phylogenetic inference? Systematic Biology, 52:124-126. pdf copy

(18) Pollock, D. D., D. J Zwickl, J. A. McGuire, and D. M. Hillis. 2002. Increased taxon sampling is advantageous for phylogenetic inference. Systematic Biology 51:664-671. pdf copy

(17) Grismer, L. L., J. A. McGuire, R. A. Sosa, and H. Kaiser. 2002. Revised checklist and comments on the terrestrial herpetofauna of Pulau Tioman, Peninsular Malaysia. Herpetological Reviewpdf copy

(16) McGuire, J. A., and Kiew, B. H. 2001. Phylogenetic systematics of Southeast Asian flying lizards (Iguania: Agamidae: Draco) as inferred from mitochondrial DNA sequence data. Biological Journal of the Linnean Society 72:203-229. pdf copy

(15) Hallermann, J., and J. A. McGuire. 2001. A new species of Pseudocalotes (Squamata: Agamidae) from Bukit Larut, West Malaysia. Herpetologica 57:255-265. pdf copy

(14) McGuire, J. A., and A. C. Alcala. 2000. A taxonomic revision of the flying lizards of the Philippine Islands (Iguania: Agamidae: Draco), with a description of a new species. Herpetological Monographs 14:81-138. pdf copy

(13) McGuire, J. A. 2000. Crotaphytus vestigium (Smith and Tanner, 1972): proposed conservation of the specific name. Bulletin of Zoological Nomenclature 57:158-161. pdf copy

(12) Brown, R. M., J. A. McGuire, J. W. Ferner, N. Icarangal, and R. S. Kennedy. 2000. Amphibians and reptiles of Luzon Island, II: Preliminary report on the herpetofauna of Aurora Memorial National Park, Philippines. Hammadryad 25:175-195. pdf copy

(11) Brown, R. M., J. A. McGuire, and A. C. Diesmos. 2000. Status of some frogs related to Rana everetti (Anura: Ranidae); description of a new species and resurrection of R. igorota. Herpetologica 56:81-104. pdf copy

(10) Brown, R. M., J. A. McGuire, J. W. Ferner, and A. C. Alcala. 1999. New species of diminutive scincid lizard (Squamata; Lygosominae: Sphenomorphus) from Luzon Island, Republic of the Philippines. Copeia 1999:362-370. pdf copy

(9) Smith, H. M., L. E. Brown, D. Chiszar, L. L. Grismer, G. S. Allen, A. Fishbein, B. D. Hollingsworth, J. A. McGuire, V. Wallach, P. Strimple, and E. A. Liner. 1998. Crotalus ruber Cope, 1892 (Reptilia, Serpentes): proposed precedence of the specific name over that of Crotalus exsul Garman, 1884. Bulletin of Zoological Nomenclature 55:229-232. pdf copy

(8) Messenger, S. L., and J. A. McGuire. 1998. Morphology, molecules, and the phylogenetics of cetaceans. Systematic Biology 47:90-124. pdf copy

(7) McGuire, J. A. 1996. Phylogenetic systematics of crotaphytid lizards. Bulletin of the Carnegie Museum No. 32:1-143. pdf copy

(6) Grismer, L. L., and J. A. McGuire. 1996. Taxonomy and biogeography of the Sceloporus magister complex (Squamata: Phrynosomatidae) in Baja California, México. Herpetologica 52:416-427. pdf copy

(5) McGuire, J. A. 1994. A new species of collared lizard (Iguania: Crotaphytidae) from Northeastern Baja California, México. Herpetologica 50:438-450. pdf copy

(4) Grismer, L. L., J. A. McGuire, and B. D. Hollingsworth. 1994. A report on the herpetofauna of the Vizcaíno Peninsula, Baja California, México, with a discussion of its biogeographic and taxonomic implications.   Bulletin of the Southern California Academy of Sciences 93:45-80. pdf copy

(3) McGuire, J. A. and L. L. Grismer. 1993. The taxonomy and biogeography of Thamnophis hammondii and T. digueti (Reptilia: Squamata: Colubridae) in Baja California, México. Herpetologica 49:354-65. pdf copy

(2) Grismer, L. L. and J. A. McGuire. 1993. The oases of central Baja California, México. Part I. A preliminary account of the relictual mesophilic herpetofauna and the status of the oases.Bulletin of the Southern California Academy of Sciences 92:2-24. pdf copy

(1) Cooper, W. E. and J. A. McGuire. 1993. Progesterone induces bright orange throat coloration in female Petrosaurus mearnsi. Amphibia-Reptilia 14:213-221. pdf copy